3DMET: B04317

Universal description

 
Entry B04317
Name trans,trans,cis-Geranylgeranyl diphosphate; trans,trans,cis-Geranylgeranyl pyrophosphate; Geranylneryl diphosphate; 2-cis,6-trans,10-trans-Geranylgeranyl diphosphate
Formula C20H36O7P2
Weight 450.194
Canonical SMILES C/C=C\1/[C@@H](O)[N@@H+]2[C@H]3C[C@@]45[C@H](OC(=O)C)[C@H]3[C@H]1C[C@H]2[C@@H]5Nc6ccccc64
InChI 1/C21H24N2O3/c1-3-11-12-8-15-18-21(13-6-4-5-7-14(13)22-18)9-16(23(15)20(11)25)17(12)19(21)26-10(2)24/h3-7,12,15-20,22,25H,8-9H2,1-2H3/p+1/b11-3+/t12-,15-,16-,17-,18-,19+,20+,21+/m0/s1
COMPOUND C11356
 

2D and 3D structures/descriptors

 
2D Structure

3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 1
Weight 353.442
LogP(o/w) 1.315
SlogP 0.604
LogS -2.74948
SMR 9.56012
TPSA (A2) 63
Number of rings 6
Number of atoms 51
   Chiral atoms 8
   H-bond acceptor 2
   H-bond donor 2
   Acidic atoms 0
   Basic atoms 1
   Aromatic atoms 6
    Heavy atoms 26
Number of bonds 56
   Single bonds 48
   Rotatable single bonds 1
   Double bonds 2
   Triple bonds 0
   Aromatic bonds 6
Volume (A3) 335
ASA (A2) 568.291
VSA (A2) 358.274
Density 1.05204
Diameter 10
Dipole (debye) 0
Globularity 0.113932
Potential energy (kcal/mol) 92.3346
   angle bend energy 39.4922
   electrostatic energy -27.6563
   non-bond energy 29.0549
   out-of-plane energy 0.14264
   solvation energy -66.757
   bond stretch-bend energy -1.35597
   torsion energy 16.4217
   Van del Waals energy 56.7112

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
status Completely same chiraliry