3DMET: B00020

Universal description

 
Entry B00020
Name L-Ornithine; (S)-2,5-Diaminovaleric acid; (S)-2,5-Diaminopentanoic acid; (S)-2,5-Diaminopentanoate
Formula C5H12N2O2
Weight 132.09
Canonical SMILES *[NH+](*)[C@@H](CCC[NH3+])C(=O)[OH-]
InChI 1/C15H29O10P3/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-23-27(19,20)25-28(21,22)24-26(16,17)18/h7,9,11,16-17,19,21H,5-6,8,10,12H2,1-4H3/q-4/b14-9+,15-11+
CASRN® 70-26-8
COMPOUND C00077
 

2D and 3D structures/descriptors

 
2D Structure

3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 1
Weight 133.171
LogP(o/w) -0.911
SlogP -3.6311
LogS 0.41569
SMR 2.86722
TPSA (A2) 95.41
Number of rings 0
Number of atoms 22
   Chiral atoms 1
   H-bond acceptor 0
   H-bond donor 0
   Acidic atoms 2
   Basic atoms 2
   Aromatic atoms 0
    Heavy atoms 9
Number of bonds 21
   Single bonds 20
   Rotatable single bonds 4
   Double bonds 1
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 133.875
ASA (A2) 333.677
VSA (A2) 173.691
Density 0.972168
Diameter 6
Dipole (debye) 0
Globularity 0.0689688
Potential energy (kcal/mol) -12.0119
   angle bend energy 9.07715
   electrostatic energy -47.9397
   non-bond energy -41.9229
   out-of-plane energy 0.000897205
   solvation energy -157.176
   bond stretch-bend energy -1.25446
   torsion energy -2.0901
   Van del Waals energy 6.01684

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
status Completely same chiraliry