3DMET: B05575

Universal description

 
Entry B05575
Name dTDP 1-ester with 2,6-dideoxy-L-erythro-hexopyranos-3-ulose
Formula C16H24N2O14P2
Weight 530.0703
Canonical SMILES C[C@@H]1OC(CC(=O)[C@H]1O)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C16H24N2O14P2/c1-7-5-18(16(23)17-15(7)22)12-3-9(19)11(30-12)6-28-33(24,25)32-34(26,27)31-13-4-10(20)14(21)8(2)29-13/h5,8-9,11-14,19,21H,3-4,6H2,1-2H3,(H,24,25)(H,26,27)(H,17,22,23)/t8-,9-,11+,12+,13u,14-/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11932.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 530.315991
LogP(o/w) -3.819
SlogP -2.907
LogS -0.7234
SMR 10.47849
TPSA (A2) 227.69
Number of rings 3
Number of atoms 58
   Chiral atoms 8
   H-bond acceptor 13
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 34
Number of bonds 60
   Single bonds 56
   Rotatable single bonds 8
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 403.75
ASA (A2) 758.9650354
VSA (A2) 469.0558369
Density 1.31347614
Diameter 18
Dipole (debye) 1.537075457
Globularity 0.03242674141
Potential energy (kcal/mol) -77.49693797
   angle bend energy 64.87149924
   electrostatic energy -181.9650174
   non-bond energy -139.9539354
   out-of-plane energy 0.02334529547
   solvation energy 7.287343704
   bond stretch-bend energy 0.3941949179
   torsion energy -13.7085387
   Van del Waals energy 42.01108199

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms