3DMET: B05574

Universal description

 
Entry B05574
Name dTDP 1-ester with (6S)-5,6-dihydro-4-hydroxy-6-methyl-5-oxo-2H-pyran
Formula C16H22N2O14P2
Weight 528.0546
Canonical SMILES C[C@@H]1OC(OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O)C=C(O)C1=O
InChI 1/C16H22N2O14P2/c1-7-5-18(16(23)17-15(7)22)12-3-9(19)11(30-12)6-28-33(24,25)32-34(26,27)31-13-4-10(20)14(21)8(2)29-13/h4-5,8-9,11-13,19-20H,3,6H2,1-2H3,(H,24,25)(H,26,27)(H,17,22,23)/t8-,9-,11+,12+,13u/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11931.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 528.299991
LogP(o/w) -2.919
SlogP -2.2161
LogS -1.22392
SMR 10.48729
TPSA (A2) 227.69
Number of rings 3
Number of atoms 56
   Chiral atoms 7
   H-bond acceptor 13
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 34
Number of bonds 58
   Single bonds 53
   Rotatable single bonds 8
   Double bonds 5
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 400.5
ASA (A2) 754.6948017
VSA (A2) 459.4927787
Density 1.319101102
Diameter 18
Dipole (debye) 0.9695778958
Globularity 0.03329732669
Potential energy (kcal/mol) -79.24767903
   angle bend energy 67.47521931
   electrostatic energy -188.1926005
   non-bond energy -142.847812
   out-of-plane energy 0.004332957753
   solvation energy 7.460229217
   bond stretch-bend energy -0.1479612662
   torsion energy -13.64688121
   Van del Waals energy 45.34478847

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms