3DMET: B05570

Universal description

 
Entry B05570
Name dTDP-4-oxo-2,6-dideoxy-L-mannose
Formula C16H24N2O14P2
Weight 530.0703
Canonical SMILES C[C@@H]1OC(C[C@H](O)C1=O)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C16H24N2O14P2/c1-7-5-18(16(23)17-15(7)22)12-3-9(19)11(30-12)6-28-33(24,25)32-34(26,27)31-13-4-10(20)14(21)8(2)29-13/h5,8-13,19-20H,3-4,6H2,1-2H3,(H,24,25)(H,26,27)(H,17,22,23)/t8-,9-,10-,11+,12+,13u/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11927.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 530.315991
LogP(o/w) -3.465
SlogP -2.907
LogS -1.04325
SMR 10.47849
TPSA (A2) 227.69
Number of rings 3
Number of atoms 58
   Chiral atoms 8
   H-bond acceptor 13
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 34
Number of bonds 60
   Single bonds 56
   Rotatable single bonds 8
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 402.375
ASA (A2) 761.2968462
VSA (A2) 465.8432689
Density 1.317964564
Diameter 18
Dipole (debye) 0.7434643249
Globularity 0.03336010237
Potential energy (kcal/mol) -73.12078983
   angle bend energy 64.67127219
   electrostatic energy -179.4703636
   non-bond energy -135.1385225
   out-of-plane energy 0.008154443857
   solvation energy 3.918751409
   bond stretch-bend energy 0.1807427355
   torsion energy -13.30275839
   Van del Waals energy 44.3318411

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms