3DMET: B05566

Universal description

 
Entry B05566
Name dTDP-D-olivose
Formula C16H26N2O14P2
Weight 532.0859
Canonical SMILES C[C@H]1OC(C[C@@H](O)[C@@H]1O)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C16H26N2O14P2/c1-7-5-18(16(23)17-15(7)22)12-3-9(19)11(30-12)6-28-33(24,25)32-34(26,27)31-13-4-10(20)14(21)8(2)29-13/h5,8-14,19-21H,3-4,6H2,1-2H3,(H,24,25)(H,26,27)(H,17,22,23)/t8-,9+,10-,11-,12-,13u,14-/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11923.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 532.331991
LogP(o/w) -3.593
SlogP -3.1152
LogS -0.50936
SMR 10.57847
TPSA (A2) 230.85
Number of rings 3
Number of atoms 60
   Chiral atoms 9
   H-bond acceptor 13
   H-bond donor 8
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 34
Number of bonds 62
   Single bonds 59
   Rotatable single bonds 8
   Double bonds 3
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 409.125
ASA (A2) 766.328732
VSA (A2) 473.6907409
Density 1.30114755
Diameter 18
Dipole (debye) 0.69215395
Globularity 0.03068510689
Potential energy (kcal/mol) -66.68958552
   angle bend energy 65.65312868
   electrostatic energy -181.4791453
   non-bond energy -138.2316051
   out-of-plane energy 0.05546263781
   solvation energy 7.438467849
   bond stretch-bend energy 0.2993299182
   torsion energy -6.179076439
   Van del Waals energy 43.24754025

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms