3DMET: B05563

Universal description

 
Entry B05563
Name dTDP-L-olivose
Formula C16H26N2O14P2
Weight 532.0859
Canonical SMILES C[C@@H]1OC(C[C@H](O)[C@H]1O)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C16H26N2O14P2/c1-7-5-18(16(23)17-15(7)22)12-3-9(19)11(30-12)6-28-33(24,25)32-34(26,27)31-13-4-10(20)14(21)8(2)29-13/h5,8-14,19-21H,3-4,6H2,1-2H3,(H,24,25)(H,26,27)(H,17,22,23)/t8-,9-,10-,11+,12+,13u,14-/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11920.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 532.331991
LogP(o/w) -3.593
SlogP -3.1152
LogS -0.50936
SMR 10.57847
TPSA (A2) 230.85
Number of rings 3
Number of atoms 60
   Chiral atoms 9
   H-bond acceptor 13
   H-bond donor 8
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 34
Number of bonds 62
   Single bonds 59
   Rotatable single bonds 8
   Double bonds 3
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 409.75
ASA (A2) 768.494718
VSA (A2) 477.1418286
Density 1.299162883
Diameter 18
Dipole (debye) 0.8925954759
Globularity 0.03058669438
Potential energy (kcal/mol) -65.26745615
   angle bend energy 67.89528057
   electrostatic energy -180.8721317
   non-bond energy -139.0587369
   out-of-plane energy 0.01951045332
   solvation energy 10.3147064
   bond stretch-bend energy 0.2191077583
   torsion energy -6.665111474
   Van del Waals energy 41.81339474

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms