3DMET: B05562

Universal description

 
Entry B05562
Name dTDP-L-megosamine
Formula C18H31N3O13P2
Weight 559.1332
Canonical SMILES C[C@@H]1OC(C[C@H]([C@H]1O)N(C)C)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C18H31N3O13P2/c1-9-7-21(18(25)19-17(9)24)14-6-12(22)13(32-14)8-30-35(26,27)34-36(28,29)33-15-5-11(20(3)4)16(23)10(2)31-15/h7,10-16,22-23H,5-6,8H2,1-4H3,(H,26,27)(H,28,29)(H,19,24,25)/t10-,11+,12-,13+,14+,15u,16-/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11919.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 559.4019907
LogP(o/w) -3.022
SlogP -2.5459
LogS -0.60979
SMR 11.72529
TPSA (A2) 213.86
Number of rings 3
Number of atoms 67
   Chiral atoms 9
   H-bond acceptor 13
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 36
Number of bonds 69
   Single bonds 66
   Rotatable single bonds 9
   Double bonds 3
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 452
ASA (A2) 812.2736435
VSA (A2) 516.9693659
Density 1.237615025
Diameter 18
Dipole (debye) 0.9649079239
Globularity 0.02939384881
Potential energy (kcal/mol) -54.59487563
   angle bend energy 71.03156273
   electrostatic energy -181.1066716
   non-bond energy -129.9748338
   out-of-plane energy 0.001541099061
   solvation energy 8.293171874
   bond stretch-bend energy 1.875643042
   torsion energy -11.1517741
   Van del Waals energy 51.13183783

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms