3DMET: B05560

Universal description

 
Entry B05560
Name dTDP-3-methyl-4-oxo-2,6-dideoxy-L-glucose
Formula C17H26N2O14P2
Weight 544.0859
Canonical SMILES C[C@@H]1OC(C[C@@](C)(O)C1=O)OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O
InChI 1/C17H26N2O14P2/c1-8-6-19(16(23)18-15(8)22)12-4-10(20)11(31-12)7-29-34(25,26)33-35(27,28)32-13-5-17(3,24)14(21)9(2)30-13/h6,9-13,20,24H,4-5,7H2,1-3H3,(H,25,26)(H,27,28)(H,18,22,23)/t9-,10-,11+,12+,13u,17+/m0/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11915.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 544.3429907
LogP(o/w) -3.058
SlogP -2.5169
LogS -1.37046
SMR 10.94019
TPSA (A2) 227.69
Number of rings 3
Number of atoms 61
   Chiral atoms 8
   H-bond acceptor 13
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 35
Number of bonds 63
   Single bonds 59
   Rotatable single bonds 8
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 422.875
ASA (A2) 762.7327097
VSA (A2) 483.7502426
Density 1.287243254
Diameter 18
Dipole (debye) 0.6690740051
Globularity 0.03301077827
Potential energy (kcal/mol) -64.31401767
   angle bend energy 68.27785255
   electrostatic energy -182.2378323
   non-bond energy -137.0663481
   out-of-plane energy 0.02446871752
   solvation energy 9.823249755
   bond stretch-bend energy 0.5839680554
   torsion energy -7.090770477
   Van del Waals energy 45.17148419

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms