3DMET: B05554

Universal description

 
Entry B05554
Name 4,6-Dideoxy-4-oxo-dTDP-D-glucose; dTDP-4-oxo-6-deoxy-D-glucose; dTDP-4-dehydro-6-deoxy-D-glucose
Formula C16H24N2O15P2
Weight 546.0652
Canonical SMILES C[C@H]1OC(OP(=O)(O)OP(=O)(O)OC[C@H]2O[C@H](C[C@@H]2O)n3cc(C)c(=O)[nH]c3=O)[C@H](O)[C@@H](O)C1=O
InChI 1/C16H24N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h4,7-10,12-13,15,19,21-22H,3,5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t7-,8+,9-,10-,12+,13-,15u/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C11907.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 546.3149906
LogP(o/w) -4.48
SlogP -3.9362
LogS -0.63894
SMR 10.61747
TPSA (A2) 247.92
Number of rings 3
Number of atoms 59
   Chiral atoms 9
   H-bond acceptor 14
   H-bond donor 8
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 35
Number of bonds 61
   Single bonds 57
   Rotatable single bonds 8
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 409.375
ASA (A2) 768.9507094
VSA (A2) 477.7908741
Density 1.334509902
Diameter 18
Dipole (debye) 0.6342013121
Globularity 0.03202290578
Potential energy (kcal/mol) -50.04197015
   angle bend energy 67.90585304
   electrostatic energy -164.2903971
   non-bond energy -119.7912258
   out-of-plane energy 0.0055529044
   solvation energy 5.712755705
   bond stretch-bend energy 0.5573276265
   torsion energy -9.438629772
   Van del Waals energy 44.49917136

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms