3DMET: B05167

Universal description

 
Entry B05167
Name 6-(3'-Triphosphoryl-1'-methylglyceryl)-7-methyl-7,8-dihydrobiopterin
Formula C11H20N5O13P3
Weight 523.027
Canonical SMILES CC1Nc2nc(N)[nH]c(=O)c2N=C1C(C)(O)C(O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O
InChI 1/C11H20N5O13P3/c1-4-7(14-6-8(13-4)15-10(12)16-9(6)18)11(2,19)5(17)3-27-31(23,24)29-32(25,26)28-30(20,21)22/h4-5,17,19H,3H2,1-2H3,(H,23,24)(H,25,26)(H2,20,21,22)(H4,12,13,15,16,18)
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C06149.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 523.2249939
LogP(o/w) -4.931
SlogP -5.7227
LogS -0.78556
SMR 10.12116
TPSA (A2) 292.15
Number of rings 2
Number of atoms 52
   Chiral atoms 5
   H-bond acceptor 13
   H-bond donor 12
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 32
Number of bonds 53
   Single bonds 49
   Rotatable single bonds 9
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 370.75
ASA (A2) 704.8813591
VSA (A2) 438.1726843
Density 1.411260942
Diameter 16
Dipole (debye) 1.639025904
Globularity 0.05383104074
Potential energy (kcal/mol) -37.24386821
   angle bend energy 80.90936419
   electrostatic energy -221.9889138
   non-bond energy -185.5998098
   out-of-plane energy 72.26690809
   solvation energy -57.58282741
   bond stretch-bend energy 2.309494902
   torsion energy -32.021523
   Van del Waals energy 36.38910397

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms