3DMET: B05166

Universal description

 
Entry B05166
Name 2,5-Diamino-6-(5'-triphosphoryl-3',4'-trihydroxy-2'-oxopentyl)- amino-4-oxopyrimidine
Formula C9H18N5O14P3
Weight 513.0063
Canonical SMILES Nc1nc(NCC(=O)C(O)C(O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)c(N)c(=O)[nH]1
InChI 1/C9H18N5O14P3/c10-5-7(13-9(11)14-8(5)18)12-1-3(15)6(17)4(16)2-26-30(22,23)28-31(24,25)27-29(19,20)21/h4,6,16-17H,1-2,10H2,(H,22,23)(H,24,25)(H2,19,20,21)(H4,11,12,13,14,18)
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C06148.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 513.1859941
LogP(o/w) -6.209
SlogP -7.4281
LogS 0.42111
SMR 9.3759
TPSA (A2) 322.88
Number of rings 1
Number of atoms 49
   Chiral atoms 4
   H-bond acceptor 13
   H-bond donor 13
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 31
Number of bonds 49
   Single bonds 45
   Rotatable single bonds 12
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 351.625
ASA (A2) 712.129536
VSA (A2) 431.7685929
Density 1.459469589
Diameter 16
Dipole (debye) 1.631963188
Globularity 0.02549662726
Potential energy (kcal/mol) 2.056104083
   angle bend energy 80.89361192
   electrostatic energy -225.1924495
   non-bond energy -197.0190342
   out-of-plane energy 119.2505774
   solvation energy -30.5285713
   bond stretch-bend energy 1.610148256
   torsion energy -26.4705799
   Van del Waals energy 28.17341526

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Undefined chiral atoms