3DMET: B05134

Universal description

 
Entry B05134
Name Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L- alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
Formula C95H156N8O28P2
Weight 1919.0504
Canonical SMILES C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@@H](CCC[C@H](N)C(=O)O)NC(=O)[C@@H](CCC(=O)O)NC(=O)[C@H](C)NC(=O)C(C)O[C@@H]1[C@@H](NC(=O)C)C(OP(=O)(O)OP(=O)(O)OC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CC/C=C(\C)/CCC=C(C)C)O[C@H](CO)[C@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(=O)C)C(=O)O
InChI 1/C95H156N8O28P2/c1-58(2)30-19-31-59(3)32-20-33-60(4)34-21-35-61(5)36-22-37-62(6)38-23-39-63(7)40-24-41-64(8)42-25-43-65(9)44-26-45-66(10)46-27-47-67(11)48-28-49-68(12)54-55-125-132(121,122)131-133(123,124)130-95-82(101-74(18)107)86(85(79(57-105)128-95)129-94-81(100-73(17)106)84(111)83(110)78(56-104)127-94)126-72(16)89(114)97-70(14)88(113)102-77(52-53-80(108)109)91(116)103-76(51-29-50-75(96)93(119)120)90(115)98-69(13)87(112)99-71(15)92(117)118/h30,32,34,36,38,40,42,44,46,48,54,69-72,75-79,81-86,94-95,104-105,110-111H,19-29,31,33,35,37,39,41,43,45,47,49-53,55-57,96H2,1-18H3,(H,97,114)(H,98,115)(H,99,112)(H,100,106)(H,101,107)(H,102,113)(H,103,116)(H,108,109)(H,117,118)(H,119,120)(H,121,122)(H,123,124)/b59-32+,60-34+,61-36+,62-38+,63-40+,64-42+,65-44+,66-46+,67-48+,68-54+/t69-,70+,71-,72?,75+,76-,77-,78-,79-,81-,82-,83-,84-,85-,86-,94+,95u/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C05898.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 1920.26896
LogP(o/w) -1.55999
SlogP 9.6676
LogS -21.72294
SMR 50.43085
TPSA (A2) 561.75
Number of rings 2
Number of atoms 289
   Chiral atoms 19
   H-bond acceptor 28
   H-bond donor 22
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 133
Number of bonds 290
   Single bonds 269
   Rotatable single bonds 64
   Double bonds 21
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 1903.625
ASA (A2) 3019.399809
VSA (A2) 2184.937601
Density 1.008743299
Diameter 70
Dipole (debye) 2.96829342
Globularity 0.04553158286
Potential energy (kcal/mol) 118.2659608
   angle bend energy 56.11001881
   electrostatic energy -73.63821055
   non-bond energy 85.10105602
   out-of-plane energy 0.2129993599
   solvation energy 79.16722665
   bond stretch-bend energy -0.6004825549
   torsion energy -47.86549718
   Van del Waals energy 158.7392666

Three-dimensionalizing operation

converted by CORINA
confirmed by InChI
judged as Undefined chiral atoms