3DMET: B05104

Universal description

 
Entry B05104
Name Se-Propenylselenocysteine Se-oxide
Formula C6H11NO3Se
Weight 224.9904
Canonical SMILES C/C=C/[Se](=O)CC(N)C(=O)O
InChI 1/C6H11NO3Se/c1-2-3-11(10)4-5(7)6(8)9/h2-3,5H,4,7H2,1H3,(H,8,9)/b3-2+
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C05706.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 224.1209943
LogP(o/w) -3.29673
SlogP -0.0644
LogS 0.70373
SMR 4.16727
TPSA (A2) 80.39
Number of rings 0
Number of atoms 22
   Chiral atoms 2
   H-bond acceptor 4
   H-bond donor 3
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 11
Number of bonds 21
   Single bonds 19
   Rotatable single bonds 4
   Double bonds 2
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 166.625
ASA (A2) 384.2937047
VSA (A2) 206.3475429
Density 1.345062232
Diameter 7
Dipole (debye) 0.6686068222
Globularity 0.1065315932
Potential energy (kcal/mol) 11.74465185
   angle bend energy 2.399337412
   electrostatic energy 6.474980975
   non-bond energy 11.30420049
   out-of-plane energy 0.03446570204
   solvation energy -10.92096557
   bond stretch-bend energy 0.3365924371
   torsion energy -3.015824875
   Van del Waals energy 4.829219513

Three-dimensionalizing operation

converted by CORINA
confirmed by InChI
judged as Undefined chiral atoms