3DMET: B04493

Universal description

 
Entry B04493
Name Urdamycinone F
Formula C25H28O11
Weight 504.1632
Canonical SMILES C[C@H]1O[C@H](C[C@@H](O)[C@@H]1O)c2ccc3C(=O)C4=C([C@H](O)C[C@]5(O)C[C@@](C)(O)CC(=O)[C@]45O)C(=O)c3c2O
InChI 1/C25H28O11/c1-9-19(29)12(26)5-14(36-9)10-3-4-11-16(20(10)30)22(32)17-13(27)6-24(34)8-23(2,33)7-15(28)25(24,35)18(17)21(11)31/h3-4,9,12-14,19,26-27,29-30,33-35H,5-8H2,1-2H3/t9-,12-,13-,14-,19-,23+,24+,25+/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C12410.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 504.4879875
LogP(o/w) -1.009
SlogP -0.9243
LogS -3.12707
SMR 11.92116
TPSA (A2) 202.05
Number of rings 5
Number of atoms 64
   Chiral atoms 8
   H-bond acceptor 11
   H-bond donor 7
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 6
    Heavy atoms 36
Number of bonds 68
   Single bonds 58
   Rotatable single bonds 1
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 6
Volume (A3) 434.125
ASA (A2) 698.7779109
VSA (A2) 463.2636098
Density 1.162080018
Diameter 15
Dipole (debye) 0.802178688
Globularity 0.07257823382
Potential energy (kcal/mol) 125.8851161
   angle bend energy 21.38932163
   electrostatic energy -2.09353278
   non-bond energy 67.26794156
   out-of-plane energy 0.02503061642
   solvation energy -18.12397097
   bond stretch-bend energy 4.605697846
   torsion energy 17.21955927
   Van del Waals energy 69.36147434

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Completely same chiraliry