3DMET: B01913

Universal description

 
Entry B01913
Name Formamidopyrimidine nucleoside triphosphate
Formula C10H18N5O15P3
Weight 541.0012
Canonical SMILES Nc1nc(N[C@@H]2O[C@H](COP(=O)(O)OP(=O)(O)OP(=O)(O)O)[C@@H](O)[C@H]2O)c(NC=O)c(=O)[nH]1
InChI 1/C10H18N5O15P3/c11-10-14-7(4(12-2-16)8(19)15-10)13-9-6(18)5(17)3(28-9)1-27-32(23,24)30-33(25,26)29-31(20,21)22/h2-3,5-6,9,17-18H,1H2,(H,12,16)(H,23,24)(H,25,26)(H2,20,21,22)(H4,11,13,14,15,19)/t3-,5-,6-,9-/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C05922.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 541.1959934
LogP(o/w) -5.939
SlogP -7.485
LogS 0.20276
SMR 9.75583
TPSA (A2) 318.12
Number of rings 2
Number of atoms 51
   Chiral atoms 6
   H-bond acceptor 14
   H-bond donor 13
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 0
    Heavy atoms 33
Number of bonds 52
   Single bonds 48
   Rotatable single bonds 10
   Double bonds 4
   Triple bonds 0
   Aromatic bonds 0
Volume (A3) 367.875
ASA (A2) 693.910814
VSA (A2) 439.8021533
Density 1.471140995
Diameter 16
Dipole (debye) 1.724080129
Globularity 0.06417709323
Potential energy (kcal/mol) -60.03523502
   angle bend energy 91.364682
   electrostatic energy -259.0034205
   non-bond energy -228.7856269
   out-of-plane energy 78.38529965
   solvation energy -54.77872187
   bond stretch-bend energy 0.9741022026
   torsion energy -23.59847834
   Van del Waals energy 30.21779368

Three-dimensionalizing operation

converted by CONCORD standalone
confirmed by InChI
judged as Completely same chiraliry