3DMET: B01886

Universal description

 
Entry B01886
Name Adenylylselenate; Adenosine-5'-phosphoselenate
Formula C10H14N5O10PSe
Weight 474.9644
Canonical SMILES Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COP(=O)(O)O[Se](=O)(=O)O)[C@@H](O)[C@H]3O
InChI 1/C10H14N5O10PSe/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-26(18,19)25-27(20,21)22/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H2,11,12,13)(H,20,21,22)/t4-,6-,7-,10-/m1/s1
 

2D and 3D structures/descriptors

 
2D Structure of KEGG

Link to COMPOUND:C05686.
3D structure (visualized by Jmol)
 

2D descriptors

3D descriptors

Formal charge 0
Weight 474.183991
LogP(o/w) -2.76394
SlogP -3.5245
LogS -0.70586
SMR 8.12916
TPSA (A2) 229.44
Number of rings 3
Number of atoms 41
   Chiral atoms 5
   H-bond acceptor 12
   H-bond donor 6
   Acidic atoms 0
   Basic atoms 0
   Aromatic atoms 9
    Heavy atoms 27
Number of bonds 43
   Single bonds 33
   Rotatable single bonds 6
   Double bonds 0
   Triple bonds 0
   Aromatic bonds 10
Volume (A3) 308.875
ASA (A2) 602.7902706
VSA (A2) 359.9106681
Density 1.535197058
Diameter 13
Dipole (debye) 0.7133858469
Globularity 0.03904847938
Potential energy (kcal/mol) -25.63742412
   angle bend energy 16.21887635
   electrostatic energy -70.45473886
   non-bond energy -44.96697414
   out-of-plane energy 0.01814428749
   solvation energy 4.365686524
   bond stretch-bend energy -1.175565405
   torsion energy 0.6237125146
   Van del Waals energy 25.48776472

Three-dimensionalizing operation

converted by CORINA
confirmed by InChI
judged as Completely same chiraliry